NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10005311

Scaffold Ga0326728_10005311


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10005311 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36438
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (69.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008989Metagenome / Metatranscriptome324N
F042692Metagenome / Metatranscriptome157Y
F064454Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000531117F008989GAGMSNNAVLIRGLDRDTYNNVVAKAKQQGKNVGDLVNEALQQYMNQSPTESPDVFDTKKLVIAGSVLLSKSDILGLHKELGNFHLENSGELTFDKDVDREAFTKIERINNTGKLRVPTDVHHFALLKAGHVRGEVEKY
Ga0326728_1000531118F064454N/AMQTGNGPEKKEEKNLVEDLERLLFEQIPEMETPGIRRCEWCKQPLPNDRYHLKICPQCRKESIDTFMKAH
Ga0326728_100053116F042692AGGMDLRRKIDGIDIIANENEIWFLQEGKICWTTREELWSGSSKLGEMLRQRGYRLQTKRFPKKIRELILTISKPPGT
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