| Basic Information | |
|---|---|
| Taxon OID | 3300033402 Open in IMG/M |
| Scaffold ID | Ga0326728_10000342 Open in IMG/M |
| Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 188736 |
| Total Scaffold Genes | 164 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 134 (81.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: New York | |||||||
| Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008065 | Metagenome / Metatranscriptome | 339 | Y |
| F024736 | Metagenome / Metatranscriptome | 204 | Y |
| F028400 | Metagenome / Metatranscriptome | 191 | Y |
| F088421 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0326728_10000342139 | F024736 | AGGAGG | MRKVIVIVLFAAFAVVGLALGNAFANGQEKAPAAAKESRWHGVIIRFDKDASTMDVRKGNIEKKIHWDSSTKWTEGTKTIDMSEFKEGSDVICLGTYPSGSVVMNATRIDLRRK |
| Ga0326728_10000342140 | F088421 | AGGGGG | MRKVIVILLFAVFAVVGLAANNAVANGQEKTAASAKHLRWSGHIVRIDNENSFMDIRNKAGVEKRIHWDSSTTWTKLNEPVTDHSEFKVDERVICLGKADEKGAFIATRIDLRLPK |
| Ga0326728_10000342144 | F024736 | AGGAGG | MRKVTVTLLFAAFMVVGLALGNAFANGQEKAPAAAKESRWHGVIIRFDKDASTMDVRKGSIEKKIHWDSSTKWTEGTKVIDMSEFKEGSDVICLGTYPSGSMVMNATRIDLRRR |
| Ga0326728_10000342160 | F008065 | AGGAGG | MRKQFALALGLFLFTIAGMAYAQQKDATQAPPQNTPHQFAGPPVAGTITSVGVDRFEIKKTDGSTQTVMVDEHTRYRQGQQDIQLEDLKPGDQVFVRGQANANKEFVAETVRRITAEEIQRFQNAGERVFGAIVAIDKNQLKVSNPRQGERIVLVNEQTQFLKDGQPIALKDLKVGDRIFALGNENQGQFLATRVMTGQFQGRGQRPDNQQ |
| Ga0326728_1000034260 | F028400 | GGAGG | MPNAKRNRRARVRREPESAGVPSCALWMLRELGPLLRRFKPPRTRSAKHLRNAAIEVLEAMRALLDEAIERLRKEGRSEGEMKRIHVSG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |