NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334722_10157896

Scaffold Ga0334722_10157896


Overview

Basic Information
Taxon OID3300033233 Open in IMG/M
Scaffold IDGa0334722_10157896 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1696
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016125Metagenome249N
F102807Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0334722_101578961F016125AGGMAAVRDFDPTQINADFDAILSQAGIAFTYQGNSITGIWSASNDEFSAFEDQRRDESKFTVFLLTSSVSAVPKVTQTLSRAGVMYFIDRVTL
Ga0334722_101578963F102807N/AAATQYFYIHQEHYCAGNKPAAEQFGRIALSFPNLDDSFRYEVQLNLARISSSRRESMQFAMGAHGVFPWCREAIASIIMLAFEKNDGKRASWWASRMLTLPEPAPKDRPWTHEAKWYGWAGHDLAARAYRLADMTADANALQLVYHKHTEPTIRITQKTLGNSTRSVSFRDAWLSTAARPEIVEHYFQIKADDSETMAMAKQFLHHVGESTEMPRAVIRVNVEDGMVPPNNWDERVLTCGETVIDAENIERILGAKKP
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