NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335083_10248071

Scaffold Ga0335083_10248071


Overview

Basic Information
Taxon OID3300032954 Open in IMG/M
Scaffold IDGa0335083_10248071 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1594
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000131Metagenome / Metatranscriptome1986Y
F045956Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0335083_102480711F045956N/AMPDLARFRAKHDPADAQEIPLHSTILHVDMDAFFVS
Ga0335083_102480712F000131N/AMRTFISQKATSVLCKAWLVLIVLLACTPLHAQQISLNALVTPSTVIEKNGKPIKFAIHAYIEFKSLAEVFPYIQSQNRRWKGKIGDTELRELEKNLLREAIESRVISMEDERPLEALVTHTNGELQAAIANLHTKVPDGYGEAFLAVQGKWKHALNCWSASPSIAGRVLSNWYPIEEGISIYGVTYDTTEHFWQSVKYHPDVTVSDLKTLLAQLEARSWVDWFRRLDDDPKLYLPNAYAVEFLRHNLEPKQIWGFLTKLDAHGLQDSDHARNVQQRGAAPFRFSAYEEKVLWGDLADTLHLVYVLSAADDPIRQKLAAAHFDGIYLGNQKMGFISEEFRLQMLEVFKMKYLQMSRFREVIANIPPEIKLEHFLNDGDSPDIPIPVYVGYLNQVRELARAGTTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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