NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335083_10030129

Scaffold Ga0335083_10030129


Overview

Basic Information
Taxon OID3300032954 Open in IMG/M
Scaffold IDGa0335083_10030129 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6059
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003354Metagenome / Metatranscriptome492Y
F006606Metagenome / Metatranscriptome369Y
F009711Metagenome / Metatranscriptome314Y

Sequences

Protein IDFamilyRBSSequence
Ga0335083_100301295F003354GGAMGASPLQRGRETLRTFGIRNKMTLKSALQDVKETTLAAVSGLLGKLAYLASLRRAQGRYVHWGMESVHGADSSERALKTAHAEIVAGVLRMPLASLLDDLQKSSQSSGVVARTYVEELRKNFDDLLPGERKDSPEASHLNSVLVALSSLEKNRGRATRSTS
Ga0335083_100301296F006606AGGAGVKRVLLVVGAAVIFLSTFVVPTVVRADGGVGTTNCDGKMCKP
Ga0335083_100301298F009711GAGGMTLAIILVIAAVLSLALILRIALSRNLQVSRASRAAGRIEPIDVEAFRNLTDPAEDEYLRRRLPASEFRMVRRERLLAMAVYVRTAGRNAAVLVRMGQSAMTASDARAAEAARQLVDDALLLRRNATLALFRIYVALAWPNSGFAAAPVLRGYERLSSRAMLLGRLQNPSTPVRISATW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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