NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10488427

Scaffold Ga0335074_10488427


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10488427 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000334Metagenome / Metatranscriptome1279Y
F002844Metagenome / Metatranscriptome526Y
F003545Metagenome / Metatranscriptome480Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_104884271F002844N/AMTSLPTPYAAARIAEFLDDHLSWAAWWDKKYGLWRVAEDDPDSDLYAESPDADVVIRYITVHDRDKRCLRTS
Ga0335074_104884272F003545GGAGGMTAIAISGMGLTGVLRLTWVHDNLAHVLEHCETDEPSGTWTGLAGPGYELALGADVDNAMLREMAAGSELADLIWEAPDQFTADHAQVFRDAMRAHLAGDAERAGQLWENLQAIWSHAWSANYAVLEFMQGTGLTRFSPVKPQHWVVASFEHHTSPHGLPRPHVHNIVLTSLTTAANVR
Ga0335074_104884273F000334N/AVFAATMADRADWDTATRAQRYLAVAADAELRRRHPGQHYPPLRSAEPQPATQAQRGELTLTAGQPISEMGQWIKDLAAAHRTFAHTLAERQNLTLPSEDPDYGDLGQAFPPWPGPARDAIVQPPKPEMRPSPRVLQRAADRDADPEAAD
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