NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335074_10000177

Scaffold Ga0335074_10000177


Overview

Basic Information
Taxon OID3300032895 Open in IMG/M
Scaffold IDGa0335074_10000177 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)100385
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (58.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5059Long. (o)-80.2517Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000508Metagenome / Metatranscriptome1069Y
F000969Metagenome / Metatranscriptome818Y
F001869Metagenome / Metatranscriptome624Y

Sequences

Protein IDFamilyRBSSequence
Ga0335074_1000017773F000969GAGGMVNDDVVKCPLCGGFTHIEKPDLLAALKNPRLREQVEQCVAQLLKSPVEDLAAVGATQAGRDFQKDVHGWNPCVPMWRRSPKE
Ga0335074_1000017779F001869AGCAGGMRLWLRCSAWLCLSLMLWTAAAESTHNHPNQTEANSCPICVVAHTASPAYSCSHTAPVFAAVGILQEEAVLAKASSDVAHRGIRGPPTT
Ga0335074_1000017793F000508AGGGGGMTNLNKVVSSLRFEYSRLEKEMEQVGKALHALGQANGMKLKKTGRTLSKEARRRIAEAQRLRWAKVRKQAAKLVKS
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