| Basic Information | |
|---|---|
| Taxon OID | 3300032895 Open in IMG/M |
| Scaffold ID | Ga0335074_10000013 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 459916 |
| Total Scaffold Genes | 424 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 282 (66.51%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000477 | Metagenome / Metatranscriptome | 1097 | Y |
| F000595 | Metagenome / Metatranscriptome | 999 | Y |
| F000867 | Metagenome / Metatranscriptome | 854 | Y |
| F008143 | Metagenome / Metatranscriptome | 338 | Y |
| F019184 | Metagenome / Metatranscriptome | 231 | Y |
| F019446 | Metagenome / Metatranscriptome | 229 | Y |
| F019706 | Metagenome / Metatranscriptome | 228 | Y |
| F077901 | Metagenome / Metatranscriptome | 117 | Y |
| F084998 | Metagenome / Metatranscriptome | 111 | Y |
| F085937 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335074_10000013119 | F000477 | N/A | MTATTKKFTPEIDATLYDEFVSVAKQNGRSQRYILEQALAFYLHNVVPSQHLVRSDVMDAFAQSVAANRDLLQRLAK |
| Ga0335074_10000013277 | F019184 | GAGG | MATKYRVVQVKGAKPETFIVVGIDFAQATITSTSESMAETGMRAYLKKAGASEADISSWIEQAREYPS |
| Ga0335074_10000013343 | F019446 | N/A | MPGEIKEVLQWYADGHSKARASERMTMFAGRFMGGMCEDGAVVPTNLSASAPEVLALTLLQHRTSPLSAGAWVNLGFALRRAALHRANDPEEMNRARVRSAVQAFDRALQLDPDNNGKNIRVWTGMSLAYHMLAMYEKELECCAQALESDRSDPRLWLLYSFALKSAGKEEEALSSMNDAYDAYVRAGKPDELREVFADVQSTTQRPCRQRMAQ |
| Ga0335074_10000013344 | F008143 | GAGG | MKSVGGIHRTRLAASKIHRHLVNEARRAVQKLGWQVPGKDISPTVVGAIPLPFPVSDSFEAAFGYRGNLRFVQFGYTAGCPQFGYSDGGDDLPSDGSLWSWFLRHPAVAPHLPERRYPTLYGKFPSGIERPPLEQIMRGGAKLPTCHCLVLDRLDRLAYLCERDQAVILFALMEPDEGDAHNVFVDGMLISPGSEDYKVAPPPGVLDELRRFMDSQVQASEGA |
| Ga0335074_10000013398 | F000595 | AGGAGG | MDQITGLAAVVMIFGMPTAGFALYTFYRVRKLRTEERLAAIQRGVDVPMQPELSESARSRRYGILSIAASVGYMVAFSIVARYEPDALIAAAFGAIPFALGLGFLLDSSLIRRDARAA |
| Ga0335074_10000013410 | F077901 | N/A | MAYEVFKRTAARIDTPTLSIVPDGRIAINAAATRICLDSGIKWVVLLWDAPNHRIALKATQKGDKNAHAVSVAPASYSGSLRATSFLKYIGWKARKREVIPATWNDKERMFEATLPIEHLGPERWGAKRTVGG |
| Ga0335074_10000013411 | F085937 | AGGAG | MAGRWKPPKEDRTDAEILRRKRELAEKLAFAVEYGTEEEFVAAAKKFKPDVGKEELKAWIMRFHAARREKRGL |
| Ga0335074_10000013412 | F084998 | AGG | MDELVDSFSDLVEDARERMSPEEFRQAEKEFDEIINKAKARASRGGRRETA |
| Ga0335074_1000001381 | F019706 | N/A | MNTPLVALLSTNVASPLKKNRVLLVDTSSHKRNLRAEVMRKLGIDVDCAADIGEARSWWRVDLYDLVLINMENGQGHRDKFCEEIRSSAPLQRLAFLVGEPEYLANSPGVEEELPAPNRYDQGVSGDIKAALTADLGGFTQRWGILEASRRISAVRSACSARTQAMRSQPSPPRDSEGRASKRTPTATTLDDLLREELR |
| Ga0335074_1000001395 | F000867 | N/A | MRIERILALVALFLLTACSPRDLLTRRLAADLIAASDPFKTPQQFTLQTGIVSNKEYATPENLVLQHHGWVSATTIACPPTLTPAPCWDILLTPSGVETVRTIVPAEETTKPSIEIPVARRTLDAVTGISKQGTVADVEFTWKWVPVDEIGAALYSSDVHYKSVVGFREYDDGWRIVQGAPHSLQTLEDALKNAEPAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |