| Basic Information | |
|---|---|
| Taxon OID | 3300032895 Open in IMG/M |
| Scaffold ID | Ga0335074_10000007 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 576715 |
| Total Scaffold Genes | 488 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 330 (67.62%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5059 | Long. (o) | -80.2517 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000138 | Metagenome / Metatranscriptome | 1954 | Y |
| F000157 | Metagenome / Metatranscriptome | 1872 | Y |
| F000299 | Metagenome / Metatranscriptome | 1341 | Y |
| F000348 | Metagenome / Metatranscriptome | 1250 | Y |
| F000414 | Metagenome / Metatranscriptome | 1169 | Y |
| F001329 | Metagenome / Metatranscriptome | 721 | Y |
| F001485 | Metagenome / Metatranscriptome | 686 | Y |
| F001632 | Metagenome / Metatranscriptome | 660 | Y |
| F022484 | Metagenome / Metatranscriptome | 214 | Y |
| F042507 | Metagenome / Metatranscriptome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335074_10000007131 | F000299 | GGGGG | MENGQKANGSRPVDRYDVGHVQEVIRQAHEELRQLLQQRAEVMKRIGTVKQTIAGLANLFGDGVLNEELLELVDRKSNGRQPGFTKACRMILMEAGHALSAREICDYFQQKMPAMLARHKDPMASVTTVLNRLVEYGEAQAVLSNSGRRAWLWVAESQTLTSTSNPAAHLAHAG |
| Ga0335074_10000007181 | F000414 | AGGAG | MSAPSRRPEIRRRRTRKEKILHLRKRLAAAKTDADRTHITAKLNKLAIGSPGQPLLK |
| Ga0335074_10000007186 | F001632 | AGGAG | MRPNSWKFAVASVFLVFSLHAFAADVNDQLAYCSYLMEQAQAQRDLLRTPIAAAGLTQPETGLPAQVVLGASLGLSDLRKAGLTVEAARRNCELYKATTGAQQNIQYAVASLEKEALNNRLTLIDQASQSIDQLMEKTAKMVEARNATRLMLFTLQTTKIKLDADRADTQAKIAALYVPPLREKSLKDLVAEKQNGEVSEQQALDKLNRQNNWDVALSVGVHQQVNPVAYGAQPYGAVSINYNLASREINRHLDRAVESYGEWKKVQEGDVIRNMEVLRQQLVESVSVQETRLKSLQEESREIDKNIQLIGNPDTSAALDFHNQLTAAQLLLQIETGDAAFRVERLHAYIARNF |
| Ga0335074_10000007234 | F000138 | N/A | MHMQLVNSFRIPFSTLISYIPVIATIVTTFFSIILARATLRYVESTDKGLALAREEFEREWTPDLHVKIERISPTEARVVVTNLAKTSVLLQLLQLRKLTHAMPFERCRLNDPLVGGTTWTAEMGRRILACTGSEFEGPIAAAMTFYAAGRMFRTDWFRSQIHVRDGRIVSLEPSNMPTRRVRVIERKGQPERRREFVQDVTATGVPAEKADAKPGEKFLVTEA |
| Ga0335074_10000007236 | F001329 | AGGAG | MSQNHYTTKRKRRPKNNKRKDSTAATMAKLRQLAAADAKKSG |
| Ga0335074_10000007316 | F000348 | N/A | MKKALLIFTALVLAPTLVVSLVLLAAGDWLTIGQTDAGATISVSSVHKLRDNQRVALVRVDYKNPAQLPQGGPFVEMRARVRFNCASGAAVPSSEWFYTRDRSGRFVVSKKAWHDDQFGKAPEGGFANMVSKSVCK |
| Ga0335074_10000007327 | F022484 | AGGAG | LPSRLAEQVERIARKRRLSDNRVLVELVEQGLEAQKEKEKAFFALAERFRAAADPKEVKQLGDEMGRFIFGE |
| Ga0335074_10000007379 | F001485 | N/A | MEKKIFWMVFVLLGLLADFLLPFWWAFFATIPILFISWWVAYRSDWF |
| Ga0335074_10000007383 | F042507 | AGG | MRILNAASRRGLDIPSVHAEAAEQDHQVTLVLDVNSKQVGQLYREWYAIADVTYVRSGAAQSVEWRSPHPPATVTIEETRAARA |
| Ga0335074_10000007450 | F000157 | GGCGG | MGAESSLRSTDSRGRLSLHKILRRERRTVPADDLASLLSRVVETKAEYDVRLLAQQLGTNYRSLMYWLRGERHVPAHLLPRMCVLLDNYEALDELESQAGRVAFKLPEPDTSLEKQLVAVSNLIKEVGEALESVGETLADGVVEESELRTTIPKLESVIRECASLKYLLEDLSRKRKKKKTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |