NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10304019

Scaffold Ga0335069_10304019


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10304019 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1897
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F058824Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_103040191F000781GGAMLTVAQLAPIKERDPYLYETLTKIVSAVNAASANSGVDPANPSPAPPPIAGVAVQAGNGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGSSRNLYVQLGNQTLYWRAYSQYVGSLASAAMTFGTPPTAVVGGGASGPAPLASRGSGALPNGLLRGGNGFGVVPGA
Ga0335069_103040193F058824N/AVGEDWVVIAHRTGLYLFSGGDPVKISQEIQPTWNQINWQYAQTLWVTVDTKERRIYVGAPFGTATTPNRVLMLDFHDLSTASDLESRPPVNITYTGRKTATDNSRKWSPWSIAANCCALIERPNGTAVAVFGGGTPGVGGSGATGKIYQLADMQYSDDGSAIPSYYTTHFFPERAVESSLGLGSHRKLFSYLTLYVEGAGNLALTSFVDSESAAAAQQPLGLSSPGLEDLELPINILGERVAFQVGTSQAGAWFKLQRFVPSVRTDPWAPVRGVN
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Institute for Fundamental Biomedical Research
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