NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10013778

Scaffold Ga0335069_10013778


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10013778 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11342
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003233Metagenome / Metatranscriptome499Y
F003893Metagenome / Metatranscriptome463Y
F006672Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_100137781F003893N/ALVTAFLLLCPAQLTVPLLYRAKPQDVPSWAEQGNFRFIRLDGGQIESWKAERTWWGDKFSADDKDVLAHIYDRDFEKMLGLLKQAEFNW
Ga0335069_100137787F006672AGGAGMSADTLPGETNIRILSSIINLVCPQCGGRMSEYQCEGRCRRNWLAEWEWANQPARRSKCRLSAHVAR
Ga0335069_100137789F003233AGGAGMKFRQIVLAILVLATMWHTAAAQPKKMKRQVEAPPPERVLAGTDSPQSNTVVSDLVAVKPEVPLGPEDVLKSYEIAMSLVAERTSTDFLAIVQAQQANQITRAQAEYLVQQEYQTAMMQYQVLSALHDVLKHDIDEANQEARRSLKAANSNTVFIVPLPSSYPGGK
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