NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10002345

Scaffold Ga0335069_10002345


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10002345 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29266
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (47.83%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082059Metagenome113N
F102386Metagenome101N
F102942Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000234515F102386N/AMIRMKTIPILVGLMLAAAGWSRGADSASKTILPSVAVAAPNTNNPAETFKPLARLNELPSPSVVPGASDQFKTLPRLDGQPMAARGSRDQMARQGAQVKKMLDLYKTPQGRVKIAELMTVIQLANQQPEVRAKVDEARKLVHDYIRRVAPELLPTLETMNANRETVRQNKQATDMVY
Ga0335069_100023452F082059AGGMVVQMPLVDLGCLCLLPDFRRLMARFPQHIKVNMLFPPYRLALSRQVIPFVLGTGNGAPILEKLRRSLQASLMRYSGEP
Ga0335069_100023456F102942GGAMKTSRIFALALGAQLFLGIISSFGQTNNQAGAVLKRDSAVSNLGEHRNQQAIPKGADADRDYLIQIRNQAARNIASTGAATNDAPAEMANLEWTGQYVERFLRIPEGNSGKPKLVRFLIPVYREKSTKPEASVGTEDKQEQDRRVPEISSVQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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