NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335069_10000906

Scaffold Ga0335069_10000906


Overview

Basic Information
Taxon OID3300032893 Open in IMG/M
Scaffold IDGa0335069_10000906 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47565
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (72.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5008Long. (o)-80.2398Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002746Metagenome / Metatranscriptome533Y
F046736Metagenome151Y
F102017Metagenome102Y
F105036Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335069_1000090614F102017GGAGGVALGKHERTQAGTFRRERSDSLAKNLREEYPEFNKVHGSTKLGTLKSRFGADSLNEVREALRKLRP
Ga0335069_1000090622F002746GAGGMRVTDLGNRPAPDSLRQLFARVVRGHGPAIPVQRRQIPYWQERGWTLKGRTYTGSYRTPYGAFYGQVIEHRGGHIDFLLYNPSDEIRRHSHWVCFQHRGNDWYMVHMAKQPRDVGSGIIIIERLITEAYQQQ
Ga0335069_1000090635F105036N/AMTNILDQVARSSSSARYSQFEPSHQREYFALRLAQKLDDAEAARHYAELVEHYSEAQLLTAYRRARAAGALTDPARSFHQELKRLEGRAGDDPPMQPLAAIRIERRAVAVAILDGEHLAAPPQVRQLSSNSDKALNSAASFISRLLEKYPLGRAALETVPHGTEVLRGDLMAIISRVLIERGISIWEVSKLDVLASFGYPCPRFRNQVRKVISSIWPGVNGNFGSPLIKDALALGLYCQVEYLFNF
Ga0335069_1000090636F046736N/AMLDHFRRRMGFTAAHVARLLGQQDSSAVSDYERGVHTPSLVNALRLGIILRVPVEFLFPALYDGLRNDIRAEEERLSVPEQQMLF
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