NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335080_10127003

Scaffold Ga0335080_10127003


Overview

Basic Information
Taxon OID3300032828 Open in IMG/M
Scaffold IDGa0335080_10127003 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2830
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002492Metagenome / Metatranscriptome554Y
F053513Metagenome / Metatranscriptome141Y
F075219Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0335080_101270031F053513N/AQGTQLAGSRMPVESTTSLDTEAASRLSERIVPAGTDSVVIDNTAVGIGGRWDTFQSRLRERRKEAVAGCSTCSCESAAKRGSESAGTLRKAV
Ga0335080_101270033F075219GGAGMTNKPAANAHPVTMNLKRTFENAVRDIYQVGLTGQASRYRTPIVQRSGRATVESPANAEKRALSDAAKALAQLWKVAPTSSR
Ga0335080_101270034F002492N/AMIKTTSPVSGVTCTLAWHDLYKAALFETDRNKVPGRIADAERAIAVRMKELFIVSTDHIEEDLVLDDALYALRALRTCVIQEASAA
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