NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000348

Scaffold Ga0335078_10000348


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000348 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73534
Total Scaffold Genes73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (61.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F000534Metagenome / Metatranscriptome1044Y
F001318Metagenome / Metatranscriptome724Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_1000034822F001318GGAGGMKRCAWLLAILILSSFAIAQISESASSQGTWKSSDPGERMFFPHDMLWGWAQFDLAPPHNEIDPNLCAGNAAEYGGANAPCSLFARYMLSGVLEVRPFGRGILRRFMVYGAPAFLFGKNVPQALYTWSPDAIGVEHSWGVGIYMNKGFEFRVTQHFLFDRLGARSTNLGVADLGTNGPWGRYMSVGVRKTFGTRRW
Ga0335078_1000034823F000534AGGAMPQEISVSYQAIKSKVYRLIDALVVGEKNEAEVQESIRRWWALIHPADRPVAQKYLLMVLGRSVSALDNMGDALLSVGNYEAAQSSVSSSQMASKRMRLVERMVKESGVRSVV
Ga0335078_100003484F000426AGCAGGMKDIHEVLRSKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLAEVDEATGDAMAAKAGANTGAASSSKASRPTAPRWP
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Institute for Fundamental Biomedical Research
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