NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335078_10000021

Scaffold Ga0335078_10000021


Overview

Basic Information
Taxon OID3300032805 Open in IMG/M
Scaffold IDGa0335078_10000021 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)307151
Total Scaffold Genes260 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)172 (66.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000260Metagenome / Metatranscriptome1431Y
F000508Metagenome / Metatranscriptome1069Y
F003854Metagenome / Metatranscriptome465Y
F094757Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0335078_10000021139F094757AGGMKSVHLIFAFFLLSLTCAYGQMVVISAPPKDPDVKPEQQTAKIVHYLKMRATARSTIRVLALALENGGSRPRLNEAINNEEDIVGWANWCIVALRDKTADANACVFQPDPR
Ga0335078_1000002133F000508AGGGGGMTNLNKVVTSLRSEYSRLQKEMERVGKALNALGGASGTMPRTKRVLSKEARRRIAEAQRQRWAKVRKAKQAKAS
Ga0335078_1000002150F003854AGGAGGMLATRHRFERNPYFQFHPLHTAFSLLGALILFGMLVWVLAVPAR
Ga0335078_1000002188F000260GGAGGMNWKRLILAVLTALAMMAATYVLPRGGPLREASLAQFPMTVGVWAIFVLLFVKLK
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Biomedical Sciences Research Center "Alexander Fleming"
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