| Basic Information | |
|---|---|
| Taxon OID | 3300032805 Open in IMG/M |
| Scaffold ID | Ga0335078_10000019 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 314181 |
| Total Scaffold Genes | 292 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 232 (79.45%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000138 | Metagenome / Metatranscriptome | 1954 | Y |
| F000238 | Metagenome / Metatranscriptome | 1494 | Y |
| F000348 | Metagenome / Metatranscriptome | 1250 | Y |
| F000530 | Metagenome / Metatranscriptome | 1047 | Y |
| F000872 | Metagenome / Metatranscriptome | 851 | Y |
| F005270 | Metagenome / Metatranscriptome | 406 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335078_10000019110 | F000530 | GAGG | LIHAMADEIESSARLLPPAPTRESKLVERPFRVKLRGSVLVLVRLPNKRSLQAAFHQLSTSGGVIHFEKPLDEKLEVELIFHIRDTTIRSKAQMLFPMWATQGWMQPFRFVDLPEESRGILDGALKTFLGESASGAAAGR |
| Ga0335078_10000019134 | F000238 | GGAG | MARTNRSPRWYGVPARIFVVTFIGTLLCFAVSLLLGILGVVGVSLVRGMHPDMRIAYRMIALPSALVAGSIILVLAVVMEVRHYRQTKTLTAIERMS |
| Ga0335078_10000019175 | F000348 | GGA | LKKALLILAGVILIPLLVVSFVRAAGDWRLVGQTEAGDRVSVSSVRVLKNNQRSALVRVEYKEPTELPQGGPFVEMRARVRFACSNGQATPTTEWFYSRDHTGRFVVSKKATRDDQFGKAPEGNFADLASKAVCSQSK |
| Ga0335078_1000001921 | F000872 | GGAGG | VSKTAAALLAFAGWFLCSIPMSAQFNGLLPNGNAYAGVSYAQLSNVVIKQSYRGWTGSYEALPFSRYPRVGLVADVSGFYRNNGLVQYNLVGGPRVSVNYGKWRPFVQAMVGIRHLNSGGFVYNPLEIDVGGGVDYKLWFKNFSWRFQGDYMHTHYLSATQNDYRTSTGIVWRF |
| Ga0335078_10000019237 | F000138 | AGGAG | MHTLQMVNSFRVQWGTLISYIPVIATIVTTFFSIILARATLRYVEATDKGLALAREEFEREWTPDLHIKMERVSSEEARIVVTNLAKASVLLQLLQLRKLSHAMPFERCRLNDPLVGGMTWSADMGKRILSCTGYDFEGPIAAAMTFYASGRMFRTDWFRAQIQVREGRIVSLEPSTMPTRRVRQVERKGAERRREFVQDVTASSESEPIKVKKDENFFVTGA |
| Ga0335078_10000019278 | F005270 | GGA | MENDSNSSPVDLSSIVASLEPDQLISAKEKLHCPRRQLTGTEMILFWALRIYLVFMFAIVLYQVFTTVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |