NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10286044

Scaffold Ga0335079_10286044


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10286044 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1802
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001778Metagenome / Metatranscriptome636Y
F001889Metagenome / Metatranscriptome622Y
F004060Metagenome / Metatranscriptome455Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_102860441F004060AGGAGMARLRKGRLRWAIAGGLVIALVVAAVVAWPYVQRYTGSAPPPQFYDKVQLEPALARDYPRVLGVAHNAGNNLGTLSTALNYGADVMEIDVIS
Ga0335079_102860442F001889GAGGVNPLICIRGSASPGHSYPMTPLYVKNTGDSPMQVTYSANPGDAMSWLKISPVEILPGEAATIPVTLVVPSKAGPGENYVILTAGGAHFDVRFSVGVPPPQQCVAAGYKAAPGINPLVFLWLLVLVVIIAVAFWVRSRLAGRL
Ga0335079_102860443F001778GGTGGVSRFGGDGKRVVQRAPEAGPPAELPGSIDRLTVRFRELIEKRDRLEGEVEKFRRRVAEAEGELDQLPFNQLQLSWRPSQLEKERLEQYRDKLRAHLVTVTSDLDATKASVGEMRAVLVKEYALAQPSRRPAEALTVPCPACGQPSVPHRAGAAGRGWRKGWFECPADNCDAAWSAKWSGGAHPVVK
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Institute for Fundamental Biomedical Research
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