| Basic Information | |
|---|---|
| Taxon OID | 3300032783 Open in IMG/M |
| Scaffold ID | Ga0335079_10001623 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25653 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (59.09%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5065 | Long. (o) | -80.2537 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000624 | Metagenome / Metatranscriptome | 977 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F007488 | Metagenome / Metatranscriptome | 350 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335079_1000162315 | F000781 | AGG | MLTVSQLAPLKSRDPYLYETLVNIVSALNSTSQRAGVDPSTPAPAPSQIASLTVSAASGWFDIAISDPSNTRPGLFYFVESDTTPAFASPRVHFLGASRNLYIQLGNQALYWRAYSQYVGSLPSAPITFGSPPTAVSGGGASGPTPLPSQGSGALSNGLARGGNGFGIYPGARVSKTTVL |
| Ga0335079_1000162316 | F007488 | GAG | MQIREYRDGDLRALKVIHERQGYPYEFPDLGNPLFVSKIVLTDGDTEGHGKENIRAAALLRLTAEAYLLLDPAFGMPRKKWQWLLTLHEAARKDAWRRGLEDVHAWLPPAIAKKFGRRLSSLGWIRDDLWTPYCKKLDPGD |
| Ga0335079_1000162318 | F000624 | GAGG | MSLVSTLAVLFSLGIQFVIFLRWLHRRMRDDEIMRVFVRDVATNHLPHIYAALRIIAAEKGIELDSPPLVRFLELNGNRGRE |
| Ga0335079_100016237 | F000512 | N/A | VKSAPRNRGGASNRAPTPASRILVVRESHETPESVAQSLALAGGWNRFGEPNYRAVWGWNRLAWIGGKFEDRDEQGNLLRERFELRLEPKYPAVNRWHIERWLPPETYGSPRQWRAQTHEMAGGQNVPALGPYPSRGEYEHCFTLETPGGNFLQLTPMIAQHIARAIERSRSFPGAAKRRALYEHLGREERAYEDWAYGLLDDAAPAFHKQPFVTVA |
| Ga0335079_100016238 | F000739 | N/A | MNLKRIEIWLKGMLAAAVSGAAGGILTGFAAVGIDPQHFNLQAGMAATLHIGLAAALINAVIGVAAYLQKSPLPQE |
| Ga0335079_100016239 | F000696 | GGA | MPVVGSSAYNTAGQITALVRSLLNDAQGNLFTDTVLLPYANSAYRKVQRALGNSGAGGFLSDDVLLVVPAVAATDASLQVSITDSTAPPNQLPTDLLVPLKIWERPNGSSDDFAEMVDLSRHGGLPSREQDLVLSVWEWRSDGIYFLGATQDTQIRLRYLKAYPDFTDATSPVLIRNAQEAIAYATAALAGWARGSPLSEKWDDAAADALEDLIVQSVRREQQSSRRRRPFSSRSGYTPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |