NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000019

Scaffold Ga0335079_10000019


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000019 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)213939
Total Scaffold Genes191 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)119 (62.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000595Metagenome / Metatranscriptome999Y
F000969Metagenome / Metatranscriptome818Y
F001869Metagenome / Metatranscriptome624Y
F004485Metagenome / Metatranscriptome436Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_10000019105F000969GAGGMINDDVVKCPLCQGFTHIQNPELLAALHHPQVREQVEAFVVELLKTPLEPAVAGAANATRNFQKDVHSWNPLVPMWRRSPKE
Ga0335079_10000019123F004485AGGAGMNYHERYTPGPASAVQFYQLWSAHVDALERHLSANTWALAATTVVLIAYPIARFVAPALLHAIVPNVVRTVINLI
Ga0335079_10000019167F000595AGGAGMDGITGLAAVVTIFGMPTAILAMYFFYRVRKLRSDERMAAIQRGVTVPMEAELSETARSRRSGILFIAGAIGFMMTFSIIARNDPDALIVAAFGAIPFALGLGYLLDSMLIRRDAKSV
Ga0335079_1000001997F001869N/AMRLWTKVSTWVCLSLMLWTAAAESAHVHPSPADSASCSICVVAHSSRPVVTSAHVAPVFGTIGLLHEKEVLLLARLDFSDAGIRGPPVL
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Institute for Fundamental Biomedical Research
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