NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335079_10000002

Scaffold Ga0335079_10000002


Overview

Basic Information
Taxon OID3300032783 Open in IMG/M
Scaffold IDGa0335079_10000002 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718107
Total Scaffold Genes604 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)404 (66.89%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Associated Families11

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5065Long. (o)-80.2537Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000655Metagenome / Metatranscriptome958Y
F004373Metagenome / Metatranscriptome441Y
F006237Metagenome / Metatranscriptome378Y
F019184Metagenome / Metatranscriptome231Y
F024875Metagenome / Metatranscriptome204Y
F056802Metagenome / Metatranscriptome137Y
F063421Metagenome / Metatranscriptome129Y
F081563Metagenome / Metatranscriptome114Y
F085014Metagenome / Metatranscriptome111Y
F090964Metagenome / Metatranscriptome108Y
F104277Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335079_10000002115F024875N/AMSDQRVDVLKSAAPDSWVALSEDESRIVAVASSYEEAVQKSESSGVSDPVLIKTPKAWLRFSM
Ga0335079_10000002166F063421AGGAGMSKKLLIAMALLIVLPFAGGAKLAAQDSSASNTASESAEPGHAYRLDFTVNEINDGKKINSRQYSMNLNAGDQSEIKIGTRVPVETKGDQFQYLDVGTSIWCRMRDRRDVTWLGNDVLLNVRSEVSDVAAPEQGTQAMGPIVRQMKIDASTIAVVGKAVVVGVVDDPNSKRQFQLEVVATKLR
Ga0335079_10000002205F056802GGGGGMMNRYIGIKLLAGFMGIYHILMGVLGIASGTLAAWGAHALWHANVTVDPQFTYLAKFLGAYVVAFGIMMLFIAKDPVRYGSLVYPAVVVAVLRIGERLMFANELKTAFGVGMDRTIGTIIVVGILNGALLVLKPREDSARMH
Ga0335079_10000002253F006237N/AMARRPDLSKQEDMMTREDLNALSDSLAHLSMHAVLDFYQQAYRACRIINSSTFPTPRAIQELVQAWRQLRKWRRG
Ga0335079_10000002254F019184AGGAGGMATKYRVVQVKGTKPETFIVVGIDFGESTITSTSESMQEAAMRGYLQKAGASTKDVEQWIEQARTYPS
Ga0335079_10000002393F000655N/AMIWWFLILGVSTLVVVCVAIALFIHLRRSLQKAHASQDDGLRDQEHRREPDSVGH
Ga0335079_10000002557F004373AGTAGLLHGTKPPGFVAIGIFLFFGATMAGLAATTLLWRGTVLDRAWTLNPTAYRQLSPLGGKVGVLFLILSAALVLSGIGWFRRQLWGWRLAVAIIAIQVLGDIINLFRGDWLRGGTGVVIAGALLIYLLSPRIRAAFSGCR
Ga0335079_10000002558F081563AGGAMPRVADTAFADRARMLIQKGYTPKVAVELVLHEMEFEQGNNSNAMEKVRADAEEFLRKTRRGLI
Ga0335079_10000002567F085014AGGAMTETIPCPLCLGEGHLKRTEVLDRLGVRDFARVAQLSAEEAFRLLQSKHASDHQQAWSRFETELTKRTSEIREQHKDALRLALSEKESLSRRVEDSLREVVQLREQNQQLEAEMAKVARVGRREELAFSDEAQTWAGVCVERVTRNGDFLLAYRDPSGSPVEPRMVVDNKDKSAVTEGDVRKLIRDARERRCPVGIMVAREESQLRQHDRERRWGQEDGVWILRTTRAWLPRDLEVLKPVFERMRTEGADFLKKNSALADEVRRTFVELGEIENELKKAAKAVEAVSGLTAKYRTRLQTLCETVACTKIAPTSERDGGVPQAIGS
Ga0335079_10000002568F104277AGGAGGLNSQTEANISQLAGNVHLLTSPIRFLFRCVLALVFLLLAPLLYITIPFVLIWADPKSDFSMLALPYMALAPFASGFWLMIIGVLPDVYRAHKEGRVFEANHLKGFGLMFVGLIGSLGAEAFLLFVLFPVPHYTENIAANAAQWRSWFAGMGIAAFLPVILLLGWRLIKWVSAGRNRCRACHETVGEANLDRLGLCRYCYDDAVNEKDHDPQMEDWIRTVRYEYGDKQWASELRRGRRNALKWKRRILHSRVQAQRI
Ga0335079_1000000275F090964AGGAMSSRWKPPKEDRIDAEAVRRERRSQEDLSEILEYGTEDDFVAYLKLHKPGIKKEELREAIRQFYVYAREKRGLC
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