NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335082_10051910

Scaffold Ga0335082_10051910


Overview

Basic Information
Taxon OID3300032782 Open in IMG/M
Scaffold IDGa0335082_10051910 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4236
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001778Metagenome / Metatranscriptome636Y
F001889Metagenome / Metatranscriptome622Y

Sequences

Protein IDFamilyRBSSequence
Ga0335082_100519103F001778GGTGGVSRFGGDGKRVVQYAPEAGPPAEPPGSIDRLTVSFRELIDKRDRLEGDVEKFRRRVAEAEGELDQLPFNQLQLCWRPSQLEKDRLEQYRDKLRAHLVTVTGDLDATRASIGEMRAVLVKEYALAQASRRPAEALTVPCPACGQASVPHRAGAAGRGWRKGWYECPADNCDAAWSAKWSGGAHPAVRMTSL
Ga0335082_100519104F001889GAGGVNPLICIRGSASPGHSYAMTPLSLRNTGDSPMEVTYSANPGAAMAWLKVSPVEILPGEAATIPVTLVVPSNAGPGENYVILTAAGTHFDVRFSVGVPPPHECVAAGYKPAPGTNPLVFLWLIVPVVIIIVIFWLRSRLAGRL
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