NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_12131700

Scaffold Ga0335085_12131700


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_12131700 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)565
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F006905Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_121317001F006905N/APAAIGAAIDALRAVLREVPEEFPDRNRHVNRFVAPLAASILAVMKDQRADIPYHSRVEHIATGGVAKYPDIVMTSLDELAAEFEGICQRPGRETE
Ga0335085_121317002F001698AGTAGGMAGVINDVEALAEFRAHLMQFNRDLAEHFATIQRHWRELGEVWRDDMYRLFGEALEEVTQGIATYLSATEGHEAHLAALVERLSGYLET

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