NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10003422

Scaffold Ga0335085_10003422


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10003422 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27513
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020924Metagenome / Metatranscriptome221Y
F028245Metagenome / Metatranscriptome192Y
F030472Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000342211F030472GGAMMRQSRRAEEGQALTESSLLLALLAGALAAGGIWLLRTQPRLLNALDAQVRGYYFALSLPFP
Ga0335085_1000342216F020924GGAMHALFAALLLATSADARAAKKPSRDPRTEGLGKSCQKNKDCKHHSQRCIHQSDAKGKPTGTGFCVLPCASFEAGTQKVTPGAEVDVSKKGKKPPPRCPPKYECRSAGADVPIDMCVKQ
Ga0335085_1000342224F028245AGGGGGMGQVEGTLFVAHALGKGAVREEQVRFADLQGLLDACVAHEGAAFVRVEVRGPSEGERRRLVLDFGHFGREDEE
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