NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10001384

Scaffold Ga0335085_10001384


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10001384 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52433
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (58.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000580Metagenome / Metatranscriptome1010Y
F000925Metagenome / Metatranscriptome832Y
F001262Metagenome / Metatranscriptome735Y
F006140Metagenome / Metatranscriptome380Y
F103038Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_1000138419F006140N/AMLRDLYSNLTAREQRALRWSAAATAVALWLSVAWADLWLLLAVPLFAAAFLVYRARHQDEPDEDDLDLL
Ga0335085_1000138438F103038AGGAGMSQATGPREGEGVAEQRAQQELTNRVGATLTRRSKPSDTRWRTWRHRLGIGGRAEA
Ga0335085_1000138439F000580N/AMSAEEDTVLIASQLADLTARVEDLAQQLKGFRKRADDAQERADTQQERIDLAARELTEVSDRLQAAANALRETV
Ga0335085_1000138441F001262AGGAGMALSDEVDEIFRREVKTLPAYAKAQAAAGSGIAPPVDEMNALLMGLVVASQRAFHLLARRLEGMDGA
Ga0335085_1000138444F000925GGAGMASSNPERKNYAEIERLEKLLAELRSSPSTARETEAIREIGLELALAIREVGAMLVNVAWEQSFAKSGRGRED
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