| Basic Information | |
|---|---|
| Taxon OID | 3300032770 Open in IMG/M |
| Scaffold ID | Ga0335085_10000849 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 75838 |
| Total Scaffold Genes | 68 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 52 (76.47%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Florida | |||||||
| Coordinates | Lat. (o) | 26.5052 | Long. (o) | -80.2345 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000131 | Metagenome / Metatranscriptome | 1986 | Y |
| F017035 | Metagenome / Metatranscriptome | 243 | Y |
| F029461 | Metagenome / Metatranscriptome | 188 | Y |
| F034310 | Metagenome / Metatranscriptome | 175 | Y |
| F099781 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335085_1000084913 | F000131 | GAGG | MIDSQSQSQERRTGVSDPHFLLLRSGLVLAALALISPLRAEEVSLQALVIPSTTITKDGRPVTFALHGFIEFKTLAEMFPYIGSQKQRWNASLDDAARERLASELLRRGIESRVVSMIDERPLETLVTHTSRELRQALSQVKEAVPPGYAEAFLAVQEKWKHSLNCWSAAPSIPARVLSNWYPIEEGIELHGSTYDSTEHFWQAVKYHPDVTVAQLAELLGVLEHRDWGPWLGRLDADPKLYLPNAYAIEFLRYNLAPQRIAWFRGELAGHGLNSADHARLVQQRGAAPFRFSAFEEKVLWGDLADLFHLVYHFSPPDDPIRKTLTIRHFDAVYLGERKMGFVSEEFRSLMLEIWHVKYLQMPRFREVISSIPMEIRLSHFLNDGDSPDIPIPIYVDYLNEIRDLARRPR |
| Ga0335085_1000084935 | F034310 | GGAGG | VRLSAIRSVFGQMPVLLFFLISAWVQGEPCVPPPEIRAQLDKIKVVIAGASDVDHGLAPLRALRQQHPSDLWVNERYQDEVQQYGIEGHLRKLTEEYQVLSMQHPDDVSYSYLYARSLMGRNTSSAIQQMAEIIAAHPDFAPAHGSLAEIYSSTAFHDEPREKAERESFLVLCPGGSLQQRPARLPDPTPLVDQAERLLTQHADPDRIAAMALQGIREDEWRLQRIRPFDWYSVEFKRQAQRELQAKYWRVWSLQVRCERLAGRPQKAAELLAVMDQRTVSPRSPADPLYWDALTALVRLYEEGSQKDLANQKLNLMQDFLAAHPDPSRAAQLEELRAQMEKPDH |
| Ga0335085_1000084949 | F017035 | AGGGGG | MRELESGLNKILEEHQHESGLHVIGGRRRLIDRLMQFFEEFKPEETPDARMSREQHN |
| Ga0335085_1000084956 | F029461 | GGA | MSGGEKFIMGYKIASASADIAMSGFGGIGAISSVQDIISITRTIRAAMVSLNVSFAAWEKSVEDQQQLLAGKSFKAIPIQAANLAFVQEAK |
| Ga0335085_1000084959 | F099781 | AGGGGG | MRTKTILVIFTLCSGLAAENLEKAQKKELEAQVKAMTAEAESLEHAGHLAEARAKYAESQALIEVNNVTDAIKRLDDQIHQQVKDALNESRKLYEMLKFKESAAVLDQAMKLDAFQPVLAYNLALCYQHLGDRAQALEPEKSQSRHAGSEAKGETPAASDFLYHGRERPVGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |