NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000300

Scaffold Ga0335085_10000300


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000300 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148250
Total Scaffold Genes125 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (65.60%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000882Metagenome / Metatranscriptome849Y
F000883Metagenome / Metatranscriptome849Y
F002831Metagenome / Metatranscriptome527Y
F005790Metagenome / Metatranscriptome390Y
F015624Metagenome / Metatranscriptome253Y
F035041Metagenome / Metatranscriptome173Y
F051484Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000300110F035041GGAMAYDRLAAGKFREHKCADHLARIGLVVDDESFTARIRKLVSQGFKPKDAVELFLQEAALEFRNEPQTLARAKAEGEDFLRRVKAGLI
Ga0335085_10000300115F005790GGAGGMFETNDLIEKTQWQKYALCFAAGCLVTTLISYVFVTPVVKRAAARSAEKAALQKLTAELEKNPVQAQLESTKADLQTAAQERDVCKARFDRQTILYDNSIAVDPQKIWIIPADVEPIVVGEHDVTYTHYDLKAKTETARFHPKRQ
Ga0335085_10000300118F051484GGAMNTREEEPDSENSSNAKSSAQASAGQNSGGRVLLAAFSRPPEARGEDVNSSLVIAAEPVAAYPGLKEAPQYLGPLTEVAKAQGFTVDDEPYEMQIGTKVVVRGDFHKDVGSRVMRQSTLAFLAQGYAVSITVIAGTQDDVEELVDGVSFGAGK
Ga0335085_1000030012F000882N/AMAQEILSVAIWEPLPDHEAAALETFHELTSIVASKGYGRDLLYRDGDQHYVFLRYWKSEDARGQAQEDPDMLRCWAKLGNEIRIVKVYETLTEA
Ga0335085_10000300124F015624N/AMKAENRKIFDEEYRVLAVESQRLTIQGVRSGEVLTIHTENAESPLSAAEYPPGQLITLRDPSNALPN
Ga0335085_1000030051F000883GGAGMSGQVVLYFEDQADALRFALAAGQVMAGEGAKYTSELVEETARVTRIRLDAANAGQVKRPDPGRVA
Ga0335085_1000030089F002831N/AMPKSEQDAAHKHHRHAVYASETTGLLLIAVVLLVLTLIRYWREIHWSLR
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