NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335085_10000173

Scaffold Ga0335085_10000173


Overview

Basic Information
Taxon OID3300032770 Open in IMG/M
Scaffold IDGa0335085_10000173 Open in IMG/M
Source Dataset NameSoil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)208951
Total Scaffold Genes169 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)127 (75.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Soil Microbial Communities From Loxahatchee National Wildlife Refuge, Florida, United States

Source Dataset Sampling Location
Location NameUSA: Florida
CoordinatesLat. (o)26.5052Long. (o)-80.2345Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046728Metagenome151Y
F073795Metagenome / Metatranscriptome120Y
F078120Metagenome116Y
F080275Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335085_10000173100F073795N/AMLQMSTIFIGLVFWNIVLFGITIWLGLTHQSTHWQHQAMGVLTGIYTCFTHCVVLMHFMGSGRGIKEAVEANHLPDDPKTGYVRRTRRFKGQTSGHATLCCILIIVTVWLGGWTDTHKLNATALRWHVGFVLFTIAYNLYAFWVEYKVIAENTAMIREIDAKIAAKT
Ga0335085_10000173139F080275AGGAGMIKRNGQPRQGVAPPSLKRMSDAEYAAYFEAFGVIKSDYQALCLIGDKLRYVEASARGLGSLDSQAQGGAAELPDSAGGRSPWEVCASLMRLNNNEVFLCKRACEHGLEYAVIDQASAASAYAKARGPLDVLRTGDNPRQVLRDYLRSESETLQLMVNDITANVRLVIAERFPKQDLRRVVNEITRMCKKVARLGFSETLEEHASHTQNQARGVRI
Ga0335085_1000017326F078120N/AMNGTATIGNKGTAAPPPRLYLRPDEAARAIGVSRRTLSAWQSARVISFRRIGRTVLFSVADIQTAIDRFRIAAVGDLSPCRQQVGPSAVVAPAPTISSKLPIRKRQMQRIALVPAVK
Ga0335085_1000017382F046728N/AMKLFHWGLMLRYMVYGVLPLVVGFIVLERYVGEGAAGVFFVVLALALPFVAIGWLGWQHFRHRKQK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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