NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316229_1322419

Scaffold Ga0316229_1322419


Overview

Basic Information
Taxon OID3300032676 Open in IMG/M
Scaffold IDGa0316229_1322419 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18023
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)559
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F082065Metagenome / Metatranscriptome113Y
F098538Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0316229_13224191F082065N/AKDQIPSFWDGNQSVVVTDMQQIARHIDCTGDVKPQLHDLFMKVEWYDLYANTKGTKDMAKLDQVMLTTIKEFQDRVAQGPVSPMYCDMKKKILIQQADIIAKTVQGRF
Ga0316229_13224192F098538GGAGMSDQLQQVAQSGDQWAAERANYAMQVHQAVGAGQLSPSEAKEILQDMINTQQLQEQANADHVKAALFFGIMELISL

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