NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316228_1079790

Scaffold Ga0316228_1079790


Overview

Basic Information
Taxon OID3300032579 Open in IMG/M
Scaffold IDGa0316228_1079790 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1215
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.0411Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F075600Metagenome / Metatranscriptome118Y
F083897Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0316228_10797901F075600N/ACGKAWQLERGLQAPSDPAWWFVGGSAFHAAAEKFLLNEFAKTNSPVKDTEIPF
Ga0316228_10797902F083897GGAGMSKEIADLRATPEAEADYRSLGPIRICPCDSDLWNVKCKFDDDGELGIYFLDMRCASCDSLAVAPMPGWKQ

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