NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335398_10377686

Scaffold Ga0335398_10377686


Overview

Basic Information
Taxon OID3300032435 Open in IMG/M
Scaffold IDGa0335398_10377686 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1130
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048110Metagenome148N
F085172Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0335398_103776861F085172GGALVQHRIREQREGPQLAFVNIARNVFDNILSYPANLNILIDALLLLNGSIPLSTEEDALDTEFFVGTSHNNTLYSILSRHVLQPNPYAAQDHEGQRLEHIEATSQSDKVLKLGSNILATLTQLPRSCPQHIQTLLDALLVLTSARPPKEKYEEDWQLTLKTAQILRANLYKSECKDLKTLGTKGE
Ga0335398_103776862F048110N/ANHVVARGEGEWSTAGALAGFGSELPCTLAHVYNRVYNIKLQEGGQIELGNKVYAATLGARLDSTDPGQDPTYYAETTKHLHDLTGYPSGHIHWVFGTASVDQHGMPSLYARPSAPSVIGTEMLLDKEILGAILISLRVDQNWIDTLSMLRRVHSIWNHVARLICPELIPDNPRMFNQGEKET
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