NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335395_10035971

Scaffold Ga0335395_10035971


Overview

Basic Information
Taxon OID3300032431 Open in IMG/M
Scaffold IDGa0335395_10035971 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3384
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005661Metagenome / Metatranscriptome393Y
F006886Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0335395_100359713F006886N/AMYLPEFDSSEFDYLSAGNSQPQQRQSQAKTPEITNIERFWNLTGNWGEFGSYFGAGLSASFIVRAIPTLIPAAVILIPASALGLGLYALSTDGPSKVRSQLILIAVATALLAANWDAWQAWIVTNSQLLILSFALLVITLGFVGTQVWSKLNVSQ
Ga0335395_100359714F005661AGGAMQFRVGKTSGAAHVAEEFNYNSGPLTPEIVHNAARTAKILELQKQLRTAYNRHDAKIRANKVEVERLTLEAIECGLTDKAQIDKFVSQAIIAGAKHESHIATLEHKLQHELGLIKVKEASTNTLANADFRQRLLLIKANHQAKGQIQEHGFTQSLRVIQASPRQAITMQNRREGFNAYINAKDFDPILAVAGNSGDMSPISAGNSKGFLGGLFDFFSGKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.