NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335395_10001884

Scaffold Ga0335395_10001884


Overview

Basic Information
Taxon OID3300032431 Open in IMG/M
Scaffold IDGa0335395_10001884 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-02 (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13048
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005661Metagenome / Metatranscriptome393Y
F006886Metagenome / Metatranscriptome362Y

Sequences

Protein IDFamilyRBSSequence
Ga0335395_1000188410F005661AGGAMQFRVGKTSGAPHIAREFGYDPGQYGTLTPEIVRDAARMAKVLDLQKQLASAMNRHLTKIYANKVEIERLTLEAIETGLTAKAEIDKYVSKAIVAGAKHESHIATLEHKLQHELGLIKVKEASTNTLANADFRQRLLLIKANHQAKGQIQESGFAQSLKAIQASPQQAIAMQNRRAGFNAYINATDFDPIPATAGSSGGISPIGAGNSKGFLGGLFDFFSGKK
Ga0335395_100018849F006886AGGCGGLTSSLAKSNPSAGQYGPLFSMLSQDFDTSEFDYLNTGNFTQSEQQSQSTTTEITNIERFWNLTGNWGEFGSYFGAGLSASLIVRAIPALIPSAVILIPAASFGLVLYSFSTEGSGRTRAHLILIAVATALLAGNWDAWQAWIFANSQLLILTFALLVITLGFVGTQVWSKLNVNQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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