NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315275_10555067

Scaffold Ga0315275_10555067


Overview

Basic Information
Taxon OID3300032401 Open in IMG/M
Scaffold IDGa0315275_10555067 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1285
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5111Long. (o)-110.3555Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039943Metagenome / Metatranscriptome162Y
F067397Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0315275_105550673F067397N/AMGRMKELYNELLQANNGEIPQEATIADLARMNDLKIYEWREYERSQNHVKKPKNEGSIKGEQS
Ga0315275_105550674F039943N/AMKEVSKGSSLNEHRQEKEYGWKPISSKKKPVKKSSEYTYAFIGVVIGLTMGILTSIFMYRDAERCNLLLEENKLLKEMLYYRDINPIETP

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