NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315287_10152523

Scaffold Ga0315287_10152523


Overview

Basic Information
Taxon OID3300032397 Open in IMG/M
Scaffold IDGa0315287_10152523 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2671
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5072Long. (o)-110.3564Alt. (m)Depth (m)87
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014513Metagenome262Y
F048800Metagenome / Metatranscriptome147Y
F054624Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0315287_101525231F014513N/AMADTFKEMAELVKGFVGDSGTCSDDRAYKAVNQARRLLWNKRNWTTQEEYVQICCVNDCFTLPARYEQIRLAWIGNDSASLADEWFNATNAFALQAGNSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEAEDIGVELMFEAQDQYDTYHKVKVTTANPPTLAKSDLLVKGIRSVTKPVTKGRIRVYAYDTALEAKTLIAIYQPNDAHPTFRRFKAPRTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLALAVQEQEKEMENVEIPTAAPIRFSNYSRADNLIGADILSPTPNDYFLYR
Ga0315287_101525233F048800N/AMDNQSSSPALTFPNVPDDFCPAGNWQNVFQQFIDEVLTNGTINVPGLGDVTPAQVAKINEDLADQQTQITALDTRVDALEPAVKIRKGIVTGVPTSDSIQTVSFTALPNVNYAVSVTPVCAGTIGASATPLFALNDASKTTTGFSIRVENNISNITSIEWMAVHTS
Ga0315287_101525234F054624N/ALWFRSHDGWAFYSNSQSEFARYFSLRKLSRDVNKWVSNDTPWMKQFASTIFFDNYLINTVAPQTYRAEGVEGLNRFHRGMVVLDLDQSSTPAPDAQLSFRWNGVWTGIRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTTAQGDDYGPNGSRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSQLKVPTTFGCDPCSPKVTECVPQKNGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWNYNIVN
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