NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315286_10979031

Scaffold Ga0315286_10979031


Overview

Basic Information
Taxon OID3300032342 Open in IMG/M
Scaffold IDGa0315286_10979031 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)843
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5096Long. (o)-110.3556Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014504Metagenome / Metatranscriptome262N
F054665Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0315286_109790311F014504N/ALLQAKYVDVLEPARTPLFFSVGAASTRLLFRAKKRETICNTKKICEQRNSMHDLTRDAAEYDEASYTPDFYSFDDPTAGHAFRMTAYREASEKLLIVLNKTISFLAEHGYSRSKTLWGVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNNIDNPASH
Ga0315286_109790312F054665N/AMEQNEITSITLPAIEAEIRTAYAEANALALTAKSNARAAVLRMADCGQMLMVAKDHVRGNRNEWLALLGIDPDKAAKAIHLARNRDQLELELWPADMA
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