Basic Information | |
---|---|
Taxon OID | 3300032278 Open in IMG/M |
Scaffold ID | Ga0310345_10011021 Open in IMG/M |
Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7640 |
Total Scaffold Genes | 14 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
Coordinates | Lat. (o) | 22.7719 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F021405 | Metagenome | 219 | N |
F028196 | Metagenome / Metatranscriptome | 192 | Y |
F045366 | Metagenome / Metatranscriptome | 153 | Y |
F081442 | Metagenome | 114 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310345_1001102110 | F028196 | GGAG | MADPDRSINLKETSGVQFSLSFLIQILGTVILAVWGYSQLDARISQSEHISKTHTYKINSIEANIKESQDKPIPSDHVQNTTLAAHARELLELNNRIHVLEKRLYDHKISPSND |
Ga0310345_100110212 | F081442 | GGAG | MATFKKDMRKSTRQEIEDKPGRLAGQIILNQLHDNNFYMWFIGNTEGNQLYTVTLSNEEKAIVGFVNEALARNYINRKNIIVQVNRSFGPKVVLVNLSLHKIHEVMQNNFSAAVQITPNTMTHQLTKQPIQTVIVNPNDHDFFVPLNIPYIIQKYTENVEVGGFDIEEHKDDKELSFYEIDKESKRYVFCPDGAAQHGPEFGES |
Ga0310345_100110213 | F021405 | AGGA | MTEEILEVDEDKLVYRVGYIKEKLLQMSTALRGKIPPDLTDQDLTEDNAFKHWIIVNSIYDASTQDESNDGFNRLLYYLFDKSKGNIARLVNNYDINIKLNDAGQLEDMQLVVLETETAEEVNDG |
Ga0310345_100110215 | F045366 | GAGG | MAESNILTPQQVSMANEAEPHEVLLAIHKRVVDTEKLMIQYRTHAQNMDVEIGMLKERIEKLESE |
⦗Top⦘ |