NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316202_10163850

Scaffold Ga0316202_10163850


Overview

Basic Information
Taxon OID3300032277 Open in IMG/M
Scaffold IDGa0316202_10163850 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1033
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014804Metagenome260Y
F016596Metagenome / Metatranscriptome246Y
F018080Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0316202_101638501F016596N/AMTNKYSLVQIRESRNEFEALLRIYGVSNLKLCKILGVNYATSRKFIENPPSLRFIHAKTLADFIGLKT
Ga0316202_101638502F018080N/AMEYLDIEIFNHFLKAYTYIIWNKKHLLGEIVEDDILKLLDEVQLIDFYHFYKTKFKVEKSKVEKYINRDDK
Ga0316202_101638503F014804GAGMNDDWIDNILDGEPSGITDTQWLIIESNIDLTSFTETMKSDILSRINDLTELEAEETITKIYENRYEKDTRKQWEKMCKDGVFGHRDF
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