| Basic Information | |
|---|---|
| Taxon OID | 3300032277 Open in IMG/M |
| Scaffold ID | Ga0316202_10014665 Open in IMG/M |
| Source Dataset Name | Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3943 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Maine | |||||||
| Coordinates | Lat. (o) | 43.8603 | Long. (o) | -69.5781 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004990 | Metagenome | 416 | Y |
| F008915 | Metagenome / Metatranscriptome | 326 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316202_100146652 | F004990 | GGA | MYGDSKKNCCACENGADLKEGNKYYCCDHYALYVLRKPMSQIEKELNYDMDI |
| Ga0316202_100146653 | F008915 | GGGGG | MESNQVTLDLYEMQSASHLGILRCLESKKHKENWGYNYKGSLNDQMAKSISGAMGEVATAKFLNCSKFEYHCNVGGVPDLVFKDLKLQVRTQLPKNNNSLIIRPKAKPDEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |