NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306920_100411747

Scaffold Ga0306920_100411747


Overview

Basic Information
Taxon OID3300032261 Open in IMG/M
Scaffold IDGa0306920_100411747 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2010
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000435Metagenome / Metatranscriptome1147Y
F001088Metagenome / Metatranscriptome782Y
F001152Metagenome / Metatranscriptome764Y

Sequences

Protein IDFamilyRBSSequence
Ga0306920_1004117472F000435GAGMSDEFNGLDATEKAGIEAMLIRSRVLAAKIANELRNKRPEHFVDKLSLADVHASLERAADVLRTVKGSRKPRGGRISMARKWGKA
Ga0306920_1004117473F001088N/AMTVSSPNVIEIKLDRLIDDMRLLRSQMIAFDRQLKGIEASLKPSEWSEQQPESKSRPWFAAAASATARTVLFAVGQSVYV
Ga0306920_1004117474F001152AGGAGGMRGEIINEYQKLNSEDQKAFRRWLWANAVVGTILLTGLIALASFPGGEAGATAQTSTIHTQAKLP
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