NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10806924

Scaffold Ga0315271_10806924


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10806924 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)808
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032255Metagenome / Metatranscriptome180N
F054813Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0315271_108069242F032255N/AMFDTDNATAVFTALASIESYDLTHEADTEEIRNSAGETVGHIGYNERVTLNLNLIPSGANAAAALAFCSLAPVNGTVAISGAPAIKMMGTADILNTGRFIYAGGGSVKMTQSGKAMVSITVKKFKNLTTGAAIALNV
Ga0315271_108069243F054813N/AVQVLDNLILPLFDDTGASALDAAANDPSGPFTAQFAAPLDFGASSISNRSRTFTRTFTLYCSATI

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