NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315271_10621605

Scaffold Ga0315271_10621605


Overview

Basic Information
Taxon OID3300032256 Open in IMG/M
Scaffold IDGa0315271_10621605 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)924
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5107Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F001490Metagenome / Metatranscriptome685Y

Sequences

Protein IDFamilyRBSSequence
Ga0315271_106216051F000926AGCAGMARFQGQTPNGVAVQQLEVLVRTAVFKSANALVGFLLQEAANRIDVAYQPKRGQQAKGRASTRVDGMFGSFELERDYYHHQGKNQGHYPANAALGLETGHTPALTRLICL
Ga0315271_106216052F001490GGAMCIYSYAMNQPQATHILQQIAQIRHMEPGKLCVIGQGPNGPYYNLQCREGGKTLTRYIPADQAGLVAEHTANYLQFQTLVSQYSRLIIEQTRAERAAGSKKKTSPPRSSWLKTRKSSS
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