NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316208_1025797

Scaffold Ga0316208_1025797


Overview

Basic Information
Taxon OID3300032254 Open in IMG/M
Scaffold IDGa0316208_1025797 Open in IMG/M
Source Dataset NameMicrobial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyrite
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2184
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Maine
CoordinatesLat. (o)43.8603Long. (o)-69.5781Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F019909Metagenome / Metatranscriptome227Y

Sequences

Protein IDFamilyRBSSequence
Ga0316208_10257971F019909N/AMKNFEQHIGHELPQEWIDYINAHTTDELYNQAKKLKFDSWCPILLENDSPELRKHLEEASELLFKYVDYIDSQLVTK
Ga0316208_10257978F008453N/AMTNYAVYRVFRDWERRPEVLMDGLTREQAQTIVKNTPSNDNSMVVFDEEPR

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