NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307472_100158806

Scaffold Ga0307472_100158806


Overview

Basic Information
Taxon OID3300032205 Open in IMG/M
Scaffold IDGa0307472_100158806 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1664
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001697Metagenome / Metatranscriptome650Y
F051041Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0307472_1001588062F051041GGAVTTFFHAWRRNQANRQAAEWLEERTEARIAVADVPAEVRDDVRRTVDTLFEGSDGEVEPALNELWDLLDGYPQQRERFARLRIVADALDFIKDRTDPANTRPAGG
Ga0307472_1001588063F001697AGGMSEAGEATENVGVKPRFSAAAGLAFAIFATGAVVLLLGGNGRAAVSHTCSATDRQFMSVAQLNMAALGSLSQDYLHGDAKPADVIDQTQTAEIGIANTNPSDPSLAKTRAILRAMFVEYGRAIRADQHHKNPGKYIYRAYGLANFAHDVLSDAKPGLMQRGCDVSPLL
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