NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315276_10738440

Scaffold Ga0315276_10738440


Overview

Basic Information
Taxon OID3300032177 Open in IMG/M
Scaffold IDGa0315276_10738440 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1055
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5099Long. (o)-110.3566Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006265Metagenome / Metatranscriptome377Y
F014501Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0315276_107384401F014501N/AKKRWGFGSVRYNTYLCIMIQLYTELGRGGFQWSRESRLQPALYFFYKVLGNVKGMLYLCIVMMKLMESPTQIKRLNKIMKNRIITCGVVSYYYENLKGYYSLHASKGDKYTTPYLYLKFNITECTGKRQYGDKGTYPIFRGHRRVRGINSSIIYNITQDGVKLFLKHFGVKYYELGKTMFVWPTQK
Ga0315276_107384402F006265AGGMDKSVDKYIFMNNMSEDQPIYERQMEPSNVTDHNIRLIVQKYYTPQVDESSKGIILRFVPNRGNVLPEALVWFEKGKKGFTNKPLSQNVWMMVDCDLRPLHELLHKHFHLNEGDFNITRTTLSSIAYETISEWAKQT
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