NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315268_10091492

Scaffold Ga0315268_10091492


Overview

Basic Information
Taxon OID3300032173 Open in IMG/M
Scaffold IDGa0315268_10091492 Open in IMG/M
Source Dataset NameSediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2865
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5106Long. (o)-110.3566Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048833Metagenome / Metatranscriptome147Y
F058935Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0315268_100914921F048833N/ATTASDFLNGFVQAGVLTFNIGARPFATIPKPFQYAPPTGSPLDFENSYANQITAAPSPASLQVVGLPQVAQTSLRSNVYFVDPNILIEAEQQFNVNISFPSGAVPVLATTVCQTPFNTNPYKIGIILDGLLLRPMQ
Ga0315268_100914923F058935GGAMAAIGNNFVFRGYTALANSAMNKLQRVLNSGVLEISFAQKLYYQIGRPFLNCPSGFGIDVQSLASSRTTAAVGVQTQLTRTNWRVSSDIRANSVYNIDPLQIIEPEIQIGAVIKFPDGNTPSFVNSALNSADATVTPEVEIGLIFDGYVIRPSQ
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