NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_12289424

Scaffold Ga0311301_12289424


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_12289424 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)615
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018994Metagenome / Metatranscriptome232Y
F070466Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_122894241F070466GGAGGMFAPLVWRAVLIPCVLISSLAAQSSNAPTSTTTCNLDDGRQVYVRYNAVSAKSEKPAN
Ga0311301_122894242F018994GAGGMGARLRILYGEGDGETLKAQAAAMEKAGHTVQPAEGRKAVQEALKQGGFDLVVLGATLSRNDRHHLPYMVKKANAETSVLVM

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