NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10564859

Scaffold Ga0311301_10564859


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10564859 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1657
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000660Metagenome / Metatranscriptome952Y
F016420Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_105648591F016420N/ALLASLLLAIALTPVKAAEREQVRIVINLMAAVKMPYPENFYRNQAKTERVWLEKDGVATIACLRNEDRRWCYEHIAPVGARAEMLRIRNEATGIFVGALFHYMVDYDLDGMIDVGSTTRIEPPPRAPIAHVIQFFHRSTGRGEQFRTDFQKMYDEGIQLALKYLGE
Ga0311301_105648592F000660AGGAMLQNIRTLAVASAFMSVVAPSSVNAAEREQVRTVINLVAGVKMPFPEHLRNNTSRTEFVRLDTNGATVACLRLDDKVRWCFEHIAPVGARAEMLRIRNEPVTGLQVGQLYHYVDDFDLDGAVDIGSTTKLEGQPYAPVGSVSQFFHRSTGRGDQFRAEYQKLYDEGIQVALKYLGE
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