NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10472123

Scaffold Ga0311301_10472123


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10472123 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1876
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F001709Metagenome / Metatranscriptome648Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_104721232F000249GGAGGMKRLAWILAFPLLISGLGWAQSASDHTMQKDEPREERMFFPRDMFWGWAQFDLAPPHNEIDPNLCAGNAGQYGGVNAPCSLFARYMLSGMLEVRPFGRGQLRRFMVFGAPAFLFGKTIPKTLYTWSPDAIGIEHSWGGGIYIAKGFEFRVTQHFLFDRLGARDTNLGAADLGNNGPWGRYMTVGVRKSFGTRRW
Ga0311301_104721233F001709GGAMPQEVSVSYQAVKSKVYRLIDTLVVGEKTEAEVQESIRRWWDLIHPADRPIAQKYLLLVLERSCLALDAVEAGLMEATDHGVPRPSASAKALKLVGRIVKQNALSPPV
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