NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311301_10084060

Scaffold Ga0311301_10084060


Overview

Basic Information
Taxon OID3300032160 Open in IMG/M
Scaffold IDGa0311301_10084060 Open in IMG/M
Source Dataset NameSb_50d combined assembly (MetaSPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6473
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F001851Metagenome / Metatranscriptome626Y
F013120Metagenome / Metatranscriptome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0311301_100840606F001851AGGAGGMNATSFSFGLLIVLLTILLLHRIRKLKPRIPGCGSQRMCPSCGLITSRLKPCCLECGESLTGVSVTPILEK
Ga0311301_100840607F000042AGGAGMKNTKFLVKLNRGGTRIPEYVQRLDLTPIQTTTNRKLALVMGRFTAEDAIKSFESSRRIPELVSVQVEYVRLSV
Ga0311301_100840608F013120GGAGGMDYFRVDHPPDRLILCHHSNCEDIADYLEVNEHGHEEFACAAHTSSERHASVLPKSVSRAKPHRSRPAA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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